At Ohio University

Manuscripts in review or in preparation

  • Yapa, M.M.(g), Shelt, M.P.(u), and Hua, Z.* (in preparation)
  • Li, Y.(g), Yapa, M.M.(g), Liao, F.(v), and Hua, Z.* (in preparation)
  • Yu, P.(g), Li, Y.(g) and Hua, Z.* (in preparation)
  • Hua, Z.* (in preparation)
    • Deciphering the protein ubiquitylation system in plants

    Hua, Z.* (2023)

    The ubiquitin-26S proteasome system - a versatile player worthy of close attention in plants

    Hua, Z.* (2023)

    MORF2-mediated plastidial retrograde signaling is involved in stress response and skotomorphogenesis beyond RNA editing

    Yapa, M.M.(g), Doroodian, P.(g), Gao, Z.(v), Yu, P. (g) and Hua, Z.* (2023)

    To kill or to be killed: how does the battle between the UPS and autophagy maintain the intracellular homeostasis in eukaryotes?

    Yu, P.(g) and Hua, Z.* (2023)

    The ubiquitin-26S proteasome system and autophagy relay proteome homeostasis regulation during silique development

    Yu, P.(g) and Hua, Z.* (2022)

    A machine learning approach to prioritizing functionally active F-box members in Arabidopsis thaliana

    Li, Y.(g), Yapa, M.M.(g) and Hua, Z.* (2021)

    The ubiquitin switch in plant stress response

    Doroodian, P.(g) and Hua, Z.* (2021)

    Diverse evolution in 111 plant genomes reveals purifying and dosage balancing selection models for F-box genes

    Hua, Z.* (2021)

    F-box protein CFK1 interacts with and degrades de novo DNA methyltransferase in Arabidopsis

    Chen, J., Jiang, J., Liu, J., Qian, S., Song, J., Kabara, R., Delo, I., Serino, G., Liu, F., Hua, Z., Zhong, X. (2020)

    Generation of a fertile ask1 mutant uncovers a comprehensive set of SCF-mediated intracellular functions

    Yapa, M.M.(g), Yu, P.(g), Liao, F.(v), Moore, A.G.(u) and Hua, Z.* (2020)

    Diversifying evolution of the ubiquitin-26s proteasome system in Brassicaceae and Poaceae

    Hua, Z.* and Yu, P.(g) (2019)

    Closing Target Trimming and CTTdocker programs for discovering hidden superfamily loci in genomes

    Hua, Z.*, and Early, M.J.(u) (2019)

    Using CTT for comprehensive superfamily gene annotations

    Hua, Z.* (2019)

    ATG8-Binding UIM proteins define a new class of autophagy adaptors and receptors

    Marshall, R.S., Hua, Z., Mali, S., McLoughlin, F., and Vierstra, R.D. (2019)

    Adaptive and degenerative evolution of the S-Phase Kinase-Associated Protein 1-Like family in Arabidopsis thaliana

    Hua, Z.* and Gao, Z.(v) (2019)

    OsACL-A2 negatively regulates cell death and disease resistance in rice

    Ruan, B.^, Hua, Z.^, Zhao, J.^, et al (^co-first authors) (2019)

    Data Oriented Genomics Techniques

    Hua, Z.* (2019)

    Genome comparison implies the role of Wsm2 in membrane trafficking and protein degradation

    Zhang, G., and Hua, Z.* (2018)

    Contrasting duplication patterns reflect functional diversities of ubiquitin and ubiquitin-like protein modifiers in plants

    Hua, Z.*, Doroodian, P.(u), and Vu, W.(u) (2018)

    Multilevel Regulation of Abiotic Stress Responses in Plants

    Haak, D.C., Fukao, T., Grene, R., Hua, Z., Ivanov, R., Perrella, G., and Li, S. (2017)

    Ubiquitin Goes Green

    Hua, Z. and Vierstra, R.D. (2016)

    Prior to Ohio University

    Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis

    Hua, Z., Pool, J.E., Schmitz, R.J., Schultz, M.D., Shiu, S.H., Ecker, J.R., and Vierstra, R.D. (2013)

    The light-response BTB1 and BTB2 proteins assemble nuclear ubiquitin ligases that modify phytochrome B and D signaling in Arabidopsis

    Christians, M.J., Gingerich, D.J., Hua, Z., Lauer, T.D., and Vierstra, R.D. (2012)

    Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift

    Hua, Z., Zou, C., Shiu, S.H., and Vierstra, R.D. (2011)

    The cullin-RING ubiquitin-protein ligases

    Hua, Z. and Vierstra, R.D. (2011)

    Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis

    Miller, M.J., Barrett-Wilt, G.A., Hua, Z., and Vierstra, R.D. (2010)

    Genome sequencing and analysis of the model grass Brachypodium distachyon

    International Brachypodium Initiative (including Hua, Z. and Vierstra, R.D.) (2010)

    The amino terminal F-box domain of Petunia inflata S-locus F-box protein is involved in the S-RNase-based self-incompatibility mechanism

    Meng, X., Hua, Z., Sun, P., and Kao, T.H. (2011)

    Collaborative non-self recognition system in S-RNase-based self-incompatibility

    Kubo, K., Entani, T., Takara, A., Wang, N., Fields, A.M., Hua, Z., Toyoda, M., Kawashima, S., Ando, T., Isogai, A., Kao, T.H., and Takayama, S. (2010)

    Functional characterization of two chimeric proteins between a Petunia inflata S-locus F-box protein, PiSLF2, and a PiSLF-like protein, PiSLFLb-S2

    Fields, A.M., Wang, N., Hua, Z., Meng, X., and Kao, T.H. (2010)

    Ectopic expression of S-RNase of Petunia inflata in pollen results in its sequestration and non-cytotoxic function

    Meng, X., Hua, Z., Wang, N., Fields, A.M., Dowd, P.E., and Kao, T.H. (2009)

    Biochemical models for S-RNase-based self-incompatibility

    Hua, Z., Fields, A., and Kao, T.H. (2008)

    Identification of major lysine residues of S(3)-RNase of Petunia inflata involved in ubiquitin-26S proteasome-mediated degradation in vitro

    Hua, Z., and Kao, T.H. (2008)

    Comparison of Petunia inflata S-Locus F-box protein (Pi SLF) with Pi SLF like proteins reveals its unique function in S-RNase based self-incompatibility

    Hua, Z., Meng, X., and Kao, T.H. (2007)

    Identification and characterization of components of a putative Petunia S-locus F-box-containing E3 ligase complex involved in S-RNase-based self-incompatibility

    Hua, Z. and Kao, T.H. (2006)

    Prior to Ph.D. at CNRRI (mostly in Chinese)

    1. Zhang G, Dali Z, Guo L, Liu H, Hu J, Gao Z, Hua Z, Qian Q. 2007. Nutrition-functional rice created by polymerizing ADP-glucose pyrophosphorylase (AGP) and giant embryoi> (ge) genes. Chinese Journal of Rice Science 21: 567-72

    2. Xue DW, Ma L, Jiang H, Hua Z, Guo LB, Huang D, Qian Q. 2005. Safety assessment of herbicide-tolerant transgenic rice. Journal of Agricultural Biotechnology 13: 723-7

    3. Lu D, Wang H, Hua Z, Yan M, Qian Q, Huang D. 2004. Production and salt-tolerant research of transgenic rice with betaine aldehyde dehydrogenase gene. Bulletin of Science and Technology 19: 179-82

    4. La H, Wang H, Huang D, Hua Z, Yan M, Gao Z, Feng X. 2003. Transformation of anti-herbicide gene into upland rice (Oryza sativa) cultivars. Journal of Agricultural Biotechnology 11: 227-32

    5. Hua Z, Zhu X, Wu M, Yu Y, Zhao Y, Gao Z, Yan M, Qian Q, Huang D. 2003. Inheritance of exo-genes integrated in the rice genome. Acta Agronomica Sinica 29: 44-48

    6. Wu M, Hua Z, Lin J, Huang D. 2002. Genetic mode of bar gene in transgenic rice. Chinese Journal of Rice Science 16: 111-4

    7. Lin H*, Hua Z*, Li N, Gao Y, Lu D, Yan M, Qian Q, Hua ZT, Shao G, Okita TW. 2002. Transformation of glgC-TMgene into rice mediated by Agrobacterium. Chinese Journal of Rice Science 16: 129-33 (*Contributed equally to this study)

    8. Wang H, Lu D, Yan M, Chen S, Peng X, Hua Z, Gao Z, Qian Q, Huang D. 2001. Production and identification of salt-tolerant transgenic rice plants. Rice Sci (formerly Chin Rice Res Newslett) 9: 14-5

    9. Lin H, Hua Z, Lu D, Gao Z, Yan M, Qian Q, Huang D. 2001. Comparative study on selective marker genes used in rice transformation by particle bombardment. Acta Agriculturae Shanghai 17: 9-12

    10. Zhang X, Hua Z, Chen G, Huang D. 2001. Research progress of stress tolerant transgenic rice. Progress in Biotechnology 21: 15-9

    11. Hua Z, Zhu X, Lin H, Gao Z, Qian Q, Yan M, Huang D. 2001. Studies of the integration and expression of exogenes in transgenic rice obtained via particle bombardment transformation. Journal of Genetics & Genomics 28: 1012-8

    12. Wang H, Hua Z, Gao Z, Yan M, Qian Q, Huang D. 2000. Studies on the high frequency plant regeneration from indica rice immature embryos and its transformation using biolistic method. Journal of Zhejiang University (science Edition) 27: 469-472

    13. Wang H, Hua Z, Gao Z, Yan M, Qian Q, Huang D. 2000. Regeneration of transgenic indica rice plants with a cecropin B gene and a bar gene. Chinese Journal of Rice Science 14: 129-32

    14. Wu M, Lin J, Hua Z, Yan M, Huang D. 2000. Application of bar gene in direct seeding rice. Acta Agriculturae Zhejiangensis 12: 290-3

    15. Gao Z, Hua Z, Xue R, Wang X, Huang D. 1999. Effects of subculture time and explant physiological characteristics on callus formation and plant regeneration in Minghui63. Rice Sci (formerly Chin Rice Res Newslett) 7: 3-4

    16. Hua Z, and Huang D. 1999. Research and countermeasure against the plant transgene silence. Chinese Bulletin of Life Sciences 11: 51-53,96

    17. Wu M, Huang D, Lin J, Wang X, Hua Z, Zhang S, Xue R. 1999. Establishment and genetic analysis of a stable herbicide resistant transgenic rice line TR4. Chinese Journal of Rice Science 13: 173-5

    18. Hua Z, Wang X, Xue R, Gao Z, Huang D. 1999. Resistance of cecropin B gene transformed rice (Oryza sativa) and its progenies to bacterial blight (Xanthomonas oryzae pv. oryzae). Chinese Journal of Rice Science 13: 114-6

    19. Hua Z, Huang D. 1999. Genetic mode of exogenes in transgenic plants. Journal of Integrative Plant Biology (formerly Acta Bot Sin) 41: 1-5

    20. Hua Z, Huang D, Xue R, Wang X, Gao Z. 1998. Preliminary study on the resistance to bacterial blight (Xanthomonas oryzae pv. oryzae) in cecropin B gene transformed rice. Rice Sci (formerly Chin Rice Res Newslett) 6: 3-4

    21. Huang D, Zhang S, Xue R, Hua Z, Xie X, Wang X. 1998. A new method to identify and improve the purity of hybrid rice with herbicide resistant gene. Rice Sci (formerly Chin Rice Res Newslett) 6: 1

    22. Xue R, Cao S, Yang W, Tian W, Hua Z, Huang D, Li L. 1998. Factors involved in microprojectile-mediated transformation of indica rice. Chinese Journal of Rice Science 12: 21-6

    23. Huang D, Li J, Zhang S, Xue R, Yang W, Hua Z, Xie X, Wang X. 1998. New technology to examine and improve the purity of hybrid rice with herbicide resistant gene. Chinese Science Bulletin 43: 67-70

    24. Zhang S, Tong H, Xue R, Hua Z, Wang X, Huang D, Xie X. 1998. Test on improving purity in hybrid rice seed production by introducing bar gene to restorers. Scientia Agricultura Sinica 31: 33-7

    25. Huang D, Li J, Xiao H, Zhang S, Xue R, Wang X, Yang W, Hua Z, Xie X. 1997. Studies on the inheritance of transgenic rice with bar gene. Rice Sci (formerly Chin Rice Res Newslett) 5: 2-3

    26. Li T, Xu R, Cai T, Shen B, Hua Z. 1994. Dynamic model of rice cold resistance. Chinese Journal of Rice Science 8: 157-61

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